HL_6BOH_159

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGUGAGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_159 not in the Motif Atlas

Homologous match to HL_7RQB_022

Geometric discrepancy: 0.1011

The information below is about HL_7RQB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6BOH|1|GB|G|712
6BOH|1|GB|G|713
6BOH|1|GB|U|714
6BOH|1|GB|G|715
6BOH|1|GB|A|716
6BOH|1|GB|G|717
6BOH|1|GB|A|718
6BOH|1|GB|C|719

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain DD

30S ribosomal protein S15

Chain FB

Small subunit ribosomal RNA; SSU rRNA

Chain FD

30S ribosomal protein S17