HL_6BOH_179

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCAAGAGC

Length

8 nucleotides

Bulged bases

6BOH|1|GB|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_179 not in the Motif Atlas

Homologous match to HL_7A0S_041

Geometric discrepancy: 0.2794

The information below is about HL_7A0S_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07145.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6BOH|1|GB|G|1630
6BOH|1|GB|C|1630|||B
6BOH|1|GB|A|1631
6BOH|1|GB|A|1632
6BOH|1|GB|G|1633
6BOH|1|GB|A|1634
6BOH|1|GB|G|1635
6BOH|1|GB|C|1636

Current chains

Chain GB

23S ribosomal RNA

Nearby chains