3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GUGAAGAUGC
Length
10 nucleotides
Bulged bases
6BOH|1|GB|A|2030, 6BOH|1|GB|A|2031, 6BOH|1|GB|G|2032
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6BOH_188 not in the Motif Atlas
Homologous match to HL_7RQB_050
Geometric discrepancy: 0.154
The information below is about HL_7RQB_050
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_90642.6
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
6

Unit IDs

6BOH|1|GB|G|2027
6BOH|1|GB|U|2028
6BOH|1|GB|G|2029
6BOH|1|GB|A|2030
6BOH|1|GB|A|2031
6BOH|1|GB|G|2032
6BOH|1|GB|A|2033
6BOH|1|GB|U|2034
6BOH|1|GB|G|2035
6BOH|1|GB|C|2036

Current chains

Chain GB
23S ribosomal RNA

Nearby chains

Chain HC
50S ribosomal protein L32
Chain KB
50S ribosomal protein L3

Coloring options:


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