HL_6BOH_188

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6BOH|1|GB|A|2030, 6BOH|1|GB|A|2031, 6BOH|1|GB|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_188 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.154

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

6BOH|1|GB|G|2027
6BOH|1|GB|U|2028
6BOH|1|GB|G|2029
6BOH|1|GB|A|2030
6BOH|1|GB|A|2031
6BOH|1|GB|G|2032
6BOH|1|GB|A|2033
6BOH|1|GB|U|2034
6BOH|1|GB|G|2035
6BOH|1|GB|C|2036

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain HC

50S ribosomal protein L32

Chain KB

50S ribosomal protein L3