HL_6BOH_191

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

6BOH|1|GB|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_191 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.157

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6BOH|1|GB|C|2248
6BOH|1|GB|U|2249
6BOH|1|GB|G|2250
6BOH|1|GB|OMG|2251
6BOH|1|GB|G|2252
6BOH|1|GB|G|2253
6BOH|1|GB|C|2254
6BOH|1|GB|G|2255
6BOH|1|GB|G|2256

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L27

Chain NC

Transfer RNA; tRNA

Chain SB

50S ribosomal protein L16