HL_6BOH_195

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_195 not in the Motif Atlas

Homologous match to HL_7RQB_057

Geometric discrepancy: 0.1026

The information below is about HL_7RQB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

6BOH|1|GB|C|2355
6BOH|1|GB|C|2356
6BOH|1|GB|U|2357
6BOH|1|GB|G|2358
6BOH|1|GB|C|2359
6BOH|1|GB|A|2360
6BOH|1|GB|A|2361
6BOH|1|GB|G|2362

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L27

Chain KC

50S ribosomal protein L35

Chain RB

50S ribosomal protein L15