HL_6BOH_210

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

6BOH|1|IA|G|18, 6BOH|1|IA|G|19, 6BOH|1|IA|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_210 not in the Motif Atlas

Homologous match to HL_4TUE_033

Geometric discrepancy: 0.1395

The information below is about HL_4TUE_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_93616.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

6BOH|1|IA|C|13
6BOH|1|IA|A|14
6BOH|1|IA|G|15
6BOH|1|IA|C|16
6BOH|1|IA|C|17
6BOH|1|IA|U|17|||A
6BOH|1|IA|G|18
6BOH|1|IA|G|19
6BOH|1|IA|U|20
6BOH|1|IA|A|21
6BOH|1|IA|G|22

Current chains

Chain IA

tRNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain H

50S ribosomal protein L5