3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
G(5MC)UCAUAAC
Length
9 nucleotides
Bulged bases
6BOH|1|IA|U|33
QA status
Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6BOH_211 not in the Motif Atlas
Homologous match to HL_5E81_212
Geometric discrepancy: 0.1137
The information below is about HL_5E81_212
Detailed Annotation
tRNA anticodon loop
Broad Annotation
Anticodon loop
Motif group
HL_06059.6
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
51

Unit IDs

6BOH|1|IA|G|31
6BOH|1|IA|5MC|32
6BOH|1|IA|U|33
6BOH|1|IA|C|34
6BOH|1|IA|A|35
6BOH|1|IA|U|36
6BOH|1|IA|A|37
6BOH|1|IA|A|38
6BOH|1|IA|C|39

Current chains

Chain IA
tRNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain D
Transfer RNA; tRNA
Chain HA
mRNA
Chain JA
Peptide chain release factor 1
Chain SA
30S ribosomal protein S9

Coloring options:


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