HL_6BOH_217
3D structure
- PDB id
- 6BOH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- G(5MC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 6BOH|1|NC|U|33
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6BOH_217 not in the Motif Atlas
- Homologous match to HL_5E81_212
- Geometric discrepancy: 0.1133
- The information below is about HL_5E81_212
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6BOH|1|NC|G|31
6BOH|1|NC|5MC|32
6BOH|1|NC|U|33
6BOH|1|NC|C|34
6BOH|1|NC|A|35
6BOH|1|NC|U|36
6BOH|1|NC|A|37
6BOH|1|NC|A|38
6BOH|1|NC|C|39
Current chains
- Chain NC
- tRNA
Nearby chains
- Chain FB
- Small subunit ribosomal RNA; SSU rRNA
- Chain IB
- Transfer RNA; tRNA
- Chain MC
- mRNA
- Chain OC
- Peptide chain release factor 1
- Chain XC
- 30S ribosomal protein S9
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