HL_6BOH_226
3D structure
- PDB id
- 6BOH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GG(5MU)(PSU)CAAAUCC
- Length
- 11 nucleotides
- Bulged bases
- 6BOH|1|D|C|56, 6BOH|1|D|A|59, 6BOH|1|D|U|60
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6BOH_226 not in the Motif Atlas
- Homologous match to HL_4WT8_137
- Geometric discrepancy: 0.4792
- The information below is about HL_4WT8_137
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_23827.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6BOH|1|D|G|52
6BOH|1|D|G|53
6BOH|1|D|5MU|54
6BOH|1|D|PSU|55
6BOH|1|D|C|56
6BOH|1|D|A|57
6BOH|1|D|A|58
6BOH|1|D|A|59
6BOH|1|D|U|60
6BOH|1|D|C|61
6BOH|1|D|C|62
Current chains
- Chain D
- tRNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: