3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GG(5MU)(PSU)CAAAUCC
Length
11 nucleotides
Bulged bases
6BOH|1|D|C|56, 6BOH|1|D|A|59, 6BOH|1|D|U|60
QA status
Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6BOH_226 not in the Motif Atlas
Homologous match to HL_4WT8_137
Geometric discrepancy: 0.4792
The information below is about HL_4WT8_137
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_23827.4
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6BOH|1|D|G|52
6BOH|1|D|G|53
6BOH|1|D|5MU|54
6BOH|1|D|PSU|55
6BOH|1|D|C|56
6BOH|1|D|A|57
6BOH|1|D|A|58
6BOH|1|D|A|59
6BOH|1|D|U|60
6BOH|1|D|C|61
6BOH|1|D|C|62

Current chains

Chain D
tRNA

Nearby chains

Chain B
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.1396 s