Motif HL_23827.4 Version HL_23827.4 of this group appears in releases 3.95 to 3.95

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9		10	1-10	2-9	3-7	4-6
1	HL_6DME_003	6DME	0.6010	1	A	ppGpp Riboswitch	G	78	G	79	A	80	U	81	A	83	A	84	A	85	G	86	A	87	C	88	cWW	cWW	tWH	tWH
2	HL_4WT8_137	4WT8	0.0000	1	C3	tRNA	G	52	G	53	U	54	U	55	G	57	A	58	U	59	U	60	C	61	C	62	cWW
3	HL_4V7M_040	4V7M	0.3037	1	AY	tRNA	G	51	G	52	U	53	U	54	G	56	A	57	A	58	U	59	C	60	C	61	cWW
4	HL_4V9I_040	4V9I	0.3865	1	AY	A-SITE tRNA	C	52	A	53	A	54	C	55	C	57	U	58	A	59	C	60	C	61	G	62	cWW	ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGAUAAAAGAC	1
GGUUCGAUUCC	1
GGUUCGAAUCC	1
CAACUCUACCG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAUAAAAGA	1
GUUCGAUUC	1
GUUCGAAUC	1
AACUCUACC	1

Release history

Release	3.95
Date	2025-03-26
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (4)
Basepair signature: cWW-F-F-F-F-F-F-F-F
Heat map statistics: Min 0.30 | Avg 0.39 | Max 0.88

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Coloring options: Nucleotide numbers

Motif HL_23827.4 Version HL_23827.4 of this group appears in releases 3.95 to 3.95 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_23827.4 Version HL_23827.4 of this group appears in releases 3.95 to 3.95

Download

Csv

Json