HL_6BOH_233
3D structure
- PDB id
- 6BOH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GG(5MC)UCAUAACC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6BOH_233 not in the Motif Atlas
- Homologous match to HL_4WT8_246
- Geometric discrepancy: 0.3766
- The information below is about HL_4WT8_246
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36684.3
- Basepair signature
- cWW-F-F-F-F-cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6BOH|1|IB|G|30
6BOH|1|IB|G|31
6BOH|1|IB|5MC|32
6BOH|1|IB|U|33
6BOH|1|IB|C|34
6BOH|1|IB|A|35
6BOH|1|IB|U|36
6BOH|1|IB|A|37
6BOH|1|IB|A|38
6BOH|1|IB|C|39
6BOH|1|IB|C|40
Current chains
- Chain IB
- tRNA
Nearby chains
- Chain FB
- Small subunit ribosomal RNA; SSU rRNA
- Chain MC
- mRNA
- Chain NC
- Transfer RNA; tRNA
- Chain VC
- 30S ribosomal protein S7
- Chain ZC
- 30S ribosomal protein S11
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