Motif HL_36684.3 Version HL_36684.3 of this group appears in releases 3.89 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10		11	1-11	2-10	3-9	3-10
1	HL_4WT8_246	4WT8	0.5970	0	C3	tRNA	G	30	A	31	U	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	C	40	ncWW
2	HL_4V7M_039	4V7M	0.4227	0	AY	tRNA	G	29	A	30	U	31	U	32	G	33	U	34	G	35	A	36	U	37	U	38	C	39	ncWW	ncWH	ncwW
3	HL_5IB8_208	5IB8	0.0000	0	1L	tRNA	G	30	A	31	C	32	U	33	U	34	U	35	U	36	A	37	A	38	U	39	C	40	cWW		ntSH
4	HL_7K16_002	7K16	0.3434	0	P	RNA (51-MER)	G	27	C	28	U	29	U	30	G	31	A	32	G	33	A	34	A	35	C	36	C	37	cWW	ncWB
5	HL_4UYK_001	4UYK	0.4360	0	R	SRP RNA	G	21	G	22	U	23	U	24	C	25	G	26	G	27	C	28	G	29	U	30	C	31	cWW
6	HL_4WSM_225	4WSM	0.5100	0	3L	tRNA	C	31	C	32	U	33	U	34	G	35	A	36	G	37	G	38	U	39	G	40	G	41	cWW	cSW
7	HL_6GSK_218	6GSK	0.4699	0	3L	tRNA	C	30	C	31	U	32	U	33	G	34	G	35	U	36	A	37	A	38	G	39	G	40	cWW	ncSW	ntSH
8	HL_6GSL_238	6GSL	0.4536	0	3L	tRNA	G	31	G	32	C	33	U	34	A	35	C	36	G	37	A	38	A	39	C	40	C	41	ncWW			ncWw

3D structures

Complete motif including flanking bases

Sequence	Counts
GAUUGAAAAUC	1
GAUUGUGAUUC	1
GACUUUUAAUC	1
GCUUGAGAACC	1
GGUUCGGCGUC	1
CCUUGAGGUGG	1
CCUUGGUAAGG	1
GGCUACGAACC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AUUGAAAAU	1
AUUGUGAUU	1
ACUUUUAAU	1
CUUGAGAAC	1
GUUCGGCGU	1
CUUGAGGUG	1
CUUGGUAAG	1
GCUACGAAC	1

Release history

Release	3.89	3.90	3.91	3.92	3.93	3.94
Date	2024-10-09	2024-11-06	2024-12-04	2025-01-01	2025-01-29	2025-02-26
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (8)
Basepair signature: cWW-F-F-F-F-cWW-F-F-F
Heat map statistics: Min 0.34 | Avg 0.44 | Max 0.66

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Coloring options: Nucleotide numbers

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