HL_6BOK_126
3D structure
- PDB id
- 6BOK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.55 Å
Loop
- Sequence
- GAA(M2G)(5MC)AACGC
- Length
- 10 nucleotides
- Bulged bases
- 6BOK|1|DB|A|968, 6BOK|1|DB|G|971
- QA status
- Modified nucleotides: M2G, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6BOK_126 not in the Motif Atlas
- Geometric match to HL_4V88_212
- Geometric discrepancy: 0.25
- The information below is about HL_4V88_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6BOK|1|DB|G|963
6BOK|1|DB|A|964
6BOK|1|DB|A|965
6BOK|1|DB|M2G|966
6BOK|1|DB|5MC|967
6BOK|1|DB|A|968
6BOK|1|DB|A|969
6BOK|1|DB|C|970
6BOK|1|DB|G|971
6BOK|1|DB|C|972
Current chains
- Chain DB
- 16S ribosomal RNA
Nearby chains
- Chain HD
- Peptide chain release factor 1
- Chain LC
- Small subunit ribosomal RNA fragment; SSU rRNA fragment
- Chain TC
- 30S ribosomal protein S9
- Chain UC
- 30S ribosomal protein S10
- Chain YC
- 30S ribosomal protein S14 type Z
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