HL_6BY1_006

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

6BY1|1|AA|C|264, 6BY1|1|AA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BY1_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.2986

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6BY1|1|AA|G|259
6BY1|1|AA|G|260
6BY1|1|AA|U|261
6BY1|1|AA|A|262
6BY1|1|AA|A|263
6BY1|1|AA|C|264
6BY1|1|AA|G|265
6BY1|1|AA|G|266
6BY1|1|AA|C|267

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AQ

30S ribosomal protein S17

Chain AT

30S ribosomal protein S20