HL_6BY1_039

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CAGCUGGGAG

Length

10 nucleotides

Bulged bases

6BY1|1|AY|C|16, 6BY1|1|AY|U|17, 6BY1|1|AY|G|18, 6BY1|1|AY|G|19, 6BY1|1|AY|G|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BY1_039 not in the Motif Atlas

Homologous match to HL_5E81_205

Geometric discrepancy: 0.3619

The information below is about HL_5E81_205

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6BY1|1|AY|C|13
6BY1|1|AY|A|14
6BY1|1|AY|G|15
6BY1|1|AY|C|16
6BY1|1|AY|U|17
6BY1|1|AY|G|18
6BY1|1|AY|G|19
6BY1|1|AY|G|20
6BY1|1|AY|A|21
6BY1|1|AY|G|22

Current chains

Chain AY

Valine-specific transfer RNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA