HL_6BY1_078

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CCUUACAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BY1_078 not in the Motif Atlas

Homologous match to HL_6UFM_002

Geometric discrepancy: 0.2047

The information below is about HL_6UFM_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

6BY1|1|BW|C|31
6BY1|1|BW|C|32
6BY1|1|BW|U|33
6BY1|1|BW|U|34
6BY1|1|BW|A|35
6BY1|1|BW|C|36
6BY1|1|BW|A|37
6BY1|1|BW|A|38
6BY1|1|BW|G|39

Current chains

Chain BW

Valine-specific transfer RNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BI

30S ribosomal protein S9

Chain BX

Messenger RNA