HL_6BY1_090

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

6BY1|1|CA|G|329, 6BY1|1|CA|A|330, 6BY1|1|CA|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BY1_090 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1554

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6BY1|1|CA|G|327
6BY1|1|CA|U|328
6BY1|1|CA|G|329
6BY1|1|CA|A|330
6BY1|1|CA|C|331
6BY1|1|CA|A|332
6BY1|1|CA|G|333
6BY1|1|CA|C|334
6BY1|1|CA|C|335

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CE

50S ribosomal protein L4

Chain CU

50S ribosomal protein L24