HL_6BY1_110

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BY1_110 not in the Motif Atlas

Homologous match to HL_5J7L_164

Geometric discrepancy: 0.2291

The information below is about HL_5J7L_164

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6BY1|1|CA|U|1222
6BY1|1|CA|G|1223
6BY1|1|CA|U|1224
6BY1|1|CA|G|1225
6BY1|1|CA|A|1226
6BY1|1|CA|G|1227

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CQ

50S ribosomal protein L20

Chain CR

50S ribosomal protein L21