HL_6BY1_115

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6BY1|1|CA|G|1452, 6BY1|1|CA|A|1453, 6BY1|1|CA|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BY1_115 not in the Motif Atlas

Geometric match to HL_1ZBH_001

Geometric discrepancy: 0.1976

The information below is about HL_1ZBH_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_56334.1

Basepair signature

cWW-F

Number of instances in this motif group

16

Unit IDs

6BY1|1|CA|C|1451
6BY1|1|CA|G|1452
6BY1|1|CA|A|1453
6BY1|1|CA|C|1454
6BY1|1|CA|G|1455
6BY1|1|CA|G|1456
6BY1|1|CA|U|1457
6BY1|1|CA|U|1458
6BY1|1|CA|G|1459

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CN

50S ribosomal protein L17