HL_6BY1_120

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

6BY1|1|CA|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BY1_120 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.3459

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6BY1|1|CA|U|1629
6BY1|1|CA|A|1630
6BY1|1|CA|G|1631
6BY1|1|CA|A|1632
6BY1|1|CA|G|1633
6BY1|1|CA|A|1634
6BY1|1|CA|A|1635
6BY1|1|CA|U|1636
6BY1|1|CA|A|1637

Current chains

Chain CA

23S ribosomal RNA

Nearby chains