HL_6BY1_208

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UGACGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BY1_208 not in the Motif Atlas

Homologous match to HL_5J7L_190

Geometric discrepancy: 0.1551

The information below is about HL_5J7L_190

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6BY1|1|DA|U|2356
6BY1|1|DA|G|2357
6BY1|1|DA|A|2358
6BY1|1|DA|C|2359
6BY1|1|DA|G|2360
6BY1|1|DA|G|2361

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D4

50S ribosomal protein L35

Chain DL

50S ribosomal protein L15

Chain DW

50S ribosomal protein L27