HL_6BY1_234

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

6BY1|1|CA|U|2473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BY1_234 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.2974

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6BY1|1|CA|A|2471
6BY1|1|CA|G|2472
6BY1|1|CA|U|2473
6BY1|1|CA|U|2474
6BY1|1|CA|C|2475
6BY1|1|CA|A|2476
6BY1|1|CA|U|2477
6BY1|1|CA|A|2478
6BY1|1|CA|U|2479

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain C6

50S ribosomal protein L36

Chain CG

50S ribosomal protein L6