HL_6BZ6_113

3D structure

PDB id

6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.18 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

6BZ6|1|XA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BZ6_113 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1057

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6BZ6|1|XA|G|259
6BZ6|1|XA|G|260
6BZ6|1|XA|U|261
6BZ6|1|XA|A|262
6BZ6|1|XA|A|263
6BZ6|1|XA|U|264
6BZ6|1|XA|G|265
6BZ6|1|XA|G|266
6BZ6|1|XA|C|267

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XQ

30S ribosomal protein S17

Chain XT

30S ribosomal protein S20