HL_6C0F_012
3D structure
- PDB id
- 6C0F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast nucleolar pre-60S ribosomal subunit (state 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CCUUGUG
- Length
- 7 nucleotides
- Bulged bases
- 6C0F|1|1|U|464, 6C0F|1|1|U|467
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6C0F_012 not in the Motif Atlas
- Geometric match to HL_6VMY_004
- Geometric discrepancy: 0.2443
- The information below is about HL_6VMY_004
- Detailed Annotation
- UNCG variation
- Broad Annotation
- UNCG variation
- Motif group
- HL_51020.2
- Basepair signature
- cWW-cSW-F
- Number of instances in this motif group
- 14
Unit IDs
6C0F|1|1|C|462
6C0F|1|1|C|463
6C0F|1|1|U|464
6C0F|1|1|U|465
6C0F|1|1|G|466
6C0F|1|1|U|467
6C0F|1|1|G|468
Current chains
- Chain 1
- Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain D
- Protein MAK16
- Chain F
- 60S ribosomal protein L7-A
- Chain z
- Ribosomal RNA-processing protein 1
Coloring options: