HL_6C4H_001

3D structure

PDB id

6C4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

U(1MG)(PSU)(5MU)GAAAAA

Length

10 nucleotides

Bulged bases

6C4H|1|A|A|751, 6C4H|1|A|A|752

QA status

Modified nucleotides: 1MG, PSU, 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C4H_001 not in the Motif Atlas

Homologous match to HL_5J7L_155

Geometric discrepancy: 0.1058

The information below is about HL_5J7L_155

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6C4H|1|A|U|744
6C4H|1|A|1MG|745
6C4H|1|A|PSU|746
6C4H|1|A|5MU|747
6C4H|1|A|G|748
6C4H|1|A|A|749
6C4H|1|A|A|750
6C4H|1|A|A|751
6C4H|1|A|A|752
6C4H|1|A|A|753

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3