HL_6C4I_012
3D structure
- PDB id
- 6C4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the peptidyl transferase center during translation termination
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- ACACGUGGUAU
- Length
- 11 nucleotides
- Bulged bases
- 6C4I|1|A|G|386
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6C4I_012 not in the Motif Atlas
- Homologous match to HL_5J7L_145
- Geometric discrepancy: 0.0754
- The information below is about HL_5J7L_145
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91503.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6C4I|1|A|A|382
6C4I|1|A|C|383
6C4I|1|A|A|384
6C4I|1|A|C|385
6C4I|1|A|G|386
6C4I|1|A|U|387
6C4I|1|A|G|388
6C4I|1|A|G|389
6C4I|1|A|U|390
6C4I|1|A|A|391
6C4I|1|A|U|392
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain Y
- 50S ribosomal protein L28
- Chain y
- Transfer RNA; tRNA
Coloring options: