HL_6C4I_029
3D structure
- PDB id
- 6C4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the peptidyl transferase center during translation termination
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- CGUAAUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6C4I_029 not in the Motif Atlas
- Homologous match to HL_6PRV_002
- Geometric discrepancy: 0.163
- The information below is about HL_6PRV_002
- Detailed Annotation
- GNRA wlth tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_98423.2
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
6C4I|1|A|C|1092
6C4I|1|A|G|1093
6C4I|1|A|U|1094
6C4I|1|A|A|1095
6C4I|1|A|A|1096
6C4I|1|A|U|1097
6C4I|1|A|A|1098
6C4I|1|A|G|1099
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 6
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L6
- Chain J
- 50S ribosomal protein L11
- Chain v
- Peptide chain release factor 2
Coloring options: