HL_6C4I_088
3D structure
- PDB id
- 6C4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the peptidyl transferase center during translation termination
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 6C4I|1|a|U|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6C4I_088 not in the Motif Atlas
- Homologous match to HL_4LFB_017
- Geometric discrepancy: 0.0681
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
6C4I|1|a|G|786
6C4I|1|a|A|787
6C4I|1|a|U|788
6C4I|1|a|U|789
6C4I|1|a|A|790
6C4I|1|a|G|791
6C4I|1|a|A|792
6C4I|1|a|U|793
6C4I|1|a|A|794
6C4I|1|a|C|795
6C4I|1|a|C|796
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain k
- 30S ribosomal protein S11
- Chain u
- 30S ribosomal protein S21
- Chain x
- Transfer RNA; tRNA
- Chain y
- Transfer RNA; tRNA
- Chain z
- mRNA
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