HL_6C5L_114

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

6C5L|1|CA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_114 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1398

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6C5L|1|CA|G|259
6C5L|1|CA|G|260
6C5L|1|CA|U|261
6C5L|1|CA|A|262
6C5L|1|CA|A|263
6C5L|1|CA|U|264
6C5L|1|CA|G|265
6C5L|1|CA|G|266
6C5L|1|CA|C|267

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CQ

30S ribosomal protein S17

Chain CT

30S ribosomal protein S20