HL_6C5L_191

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

6C5L|1|DA|A|1780, 6C5L|1|DA|C|1781, 6C5L|1|DA|C|1782, 6C5L|1|DA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_191 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.0901

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6C5L|1|DA|U|1777
6C5L|1|DA|U|1778
6C5L|1|DA|U|1779
6C5L|1|DA|A|1780
6C5L|1|DA|C|1781
6C5L|1|DA|C|1782
6C5L|1|DA|A|1783
6C5L|1|DA|A|1784
6C5L|1|DA|A|1785
6C5L|1|DA|A|1786
6C5L|1|DA|A|1787

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DD

50S ribosomal protein L2