HL_6C5L_212

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6C5L|1|DA|G|2751, 6C5L|1|DA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6C5L_212 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1056

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

6C5L|1|DA|C|2745
6C5L|1|DA|U|2746
6C5L|1|DA|G|2747
6C5L|1|DA|A|2748
6C5L|1|DA|A|2749
6C5L|1|DA|A|2750
6C5L|1|DA|G|2751
6C5L|1|DA|C|2752
6C5L|1|DA|A|2753
6C5L|1|DA|U|2754
6C5L|1|DA|C|2755
6C5L|1|DA|U|2756
6C5L|1|DA|A|2757
6C5L|1|DA|A|2758
6C5L|1|DA|G|2759

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D9

50S ribosomal protein L36

Chain DH

50S ribosomal protein L6

Chain DN

50S ribosomal protein L13