HL_6CAE_176

3D structure

PDB id

6CAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6CAE|1|2A|G|2751, 6CAE|1|2A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CAE_176 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0754

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

6CAE|1|2A|C|2745
6CAE|1|2A|U|2746
6CAE|1|2A|G|2747
6CAE|1|2A|A|2748
6CAE|1|2A|A|2749
6CAE|1|2A|A|2750
6CAE|1|2A|G|2751
6CAE|1|2A|C|2752
6CAE|1|2A|A|2753
6CAE|1|2A|U|2754
6CAE|1|2A|C|2755
6CAE|1|2A|U|2756
6CAE|1|2A|A|2757
6CAE|1|2A|A|2758
6CAE|1|2A|G|2759

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6