HL_6CAO_006

3D structure

PDB id

6CAO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosomal decoding complex at ambient temperature

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

6CAO|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CAO_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0874

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6CAO|1|A|G|259
6CAO|1|A|G|260
6CAO|1|A|U|261
6CAO|1|A|A|262
6CAO|1|A|A|263
6CAO|1|A|U|264
6CAO|1|A|G|265
6CAO|1|A|G|266
6CAO|1|A|C|267

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20