HL_6CB1_007

3D structure

PDB id

6CB1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

6CB1|1|1|G|218, 6CB1|1|1|A|219, 6CB1|1|1|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CB1_007 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.0939

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

6CB1|1|1|G|216
6CB1|1|1|U|217
6CB1|1|1|G|218
6CB1|1|1|A|219
6CB1|1|1|G|220
6CB1|1|1|A|221
6CB1|1|1|A|222
6CB1|1|1|U|223
6CB1|1|1|C|224

Current chains

Chain 1

35S pre-ribosomal RNA miscRNA

Nearby chains

Chain 2

5.8S ribosomal RNA; 5.8S rRNA

Chain C

60S ribosomal protein L4-A

Chain Y

60S ribosomal protein L26-A