HL_6CB1_009

3D structure

PDB id

6CB1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUAAAUUC

Length

8 nucleotides

Bulged bases

6CB1|1|1|A|307, 6CB1|1|1|U|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CB1_009 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3951

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

6CB1|1|1|G|304
6CB1|1|1|U|305
6CB1|1|1|A|306
6CB1|1|1|A|307
6CB1|1|1|A|308
6CB1|1|1|U|309
6CB1|1|1|U|310
6CB1|1|1|C|311

Current chains

Chain 1

35S pre-ribosomal RNA miscRNA

Nearby chains

Chain b

Ribosome biogenesis protein BRX1

Chain x

BRX1 associated peptide