HL_6CB1_017

3D structure

PDB id

6CB1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUCUUC

Length

6 nucleotides

Bulged bases

6CB1|1|1|C|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CB1_017 not in the Motif Atlas

Homologous match to HL_5TBW_018

Geometric discrepancy: 0.4515

The information below is about HL_5TBW_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

6CB1|1|1|G|763
6CB1|1|1|U|764
6CB1|1|1|C|765
6CB1|1|1|U|766
6CB1|1|1|U|767
6CB1|1|1|C|768

Current chains

Chain 1

35S pre-ribosomal RNA miscRNA

Nearby chains

Chain b

Ribosome biogenesis protein BRX1

Chain m

rRNA-processing protein EBP2