HL_6CB1_033

3D structure

PDB id

6CB1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CACAUUG

Length

7 nucleotides

Bulged bases

6CB1|1|2|A|111, 6CB1|1|2|U|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CB1_033 not in the Motif Atlas

Homologous match to HL_5TBW_075

Geometric discrepancy: 0.1654

The information below is about HL_5TBW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6CB1|1|2|C|108
6CB1|1|2|A|109
6CB1|1|2|C|110
6CB1|1|2|A|111
6CB1|1|2|U|112
6CB1|1|2|U|113
6CB1|1|2|G|114

Current chains

Chain 2

5.8S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain X

60S ribosomal protein L25

Chain j

60S ribosomal protein L37-A