3D structure

PDB id
6CFJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
GGAUGCAAAC
Length
10 nucleotides
Bulged bases
6CFJ|1|1A|U|794, 6CFJ|1|1A|A|798, 6CFJ|1|1A|A|799
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6CFJ_022 not in the Motif Atlas
Homologous match to HL_7RQB_023
Geometric discrepancy: 0.0424
The information below is about HL_7RQB_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_39334.6
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
6

Unit IDs

6CFJ|1|1A|G|791
6CFJ|1|1A|G|792
6CFJ|1|1A|A|793
6CFJ|1|1A|U|794
6CFJ|1|1A|G|795
6CFJ|1|1A|C|796
6CFJ|1|1A|A|797
6CFJ|1|1A|A|798
6CFJ|1|1A|A|799
6CFJ|1|1A|C|800

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 15
50S ribosomal protein L32
Chain 17
50S ribosomal protein L34
Chain 1E
50S ribosomal protein L3
Chain 1W
50S ribosomal protein L22

Coloring options:


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