3D structure

PDB id
6CFJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
UUUACCAAAAA
Length
11 nucleotides
Bulged bases
6CFJ|1|2A|A|1780, 6CFJ|1|2A|C|1781, 6CFJ|1|2A|C|1782, 6CFJ|1|2A|A|1786
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6CFJ_155 not in the Motif Atlas
Homologous match to HL_7RQB_045
Geometric discrepancy: 0.046
The information below is about HL_7RQB_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_43613.5
Basepair signature
cWW-tWH-tWH-F
Number of instances in this motif group
6

Unit IDs

6CFJ|1|2A|U|1777
6CFJ|1|2A|U|1778
6CFJ|1|2A|U|1779
6CFJ|1|2A|A|1780
6CFJ|1|2A|C|1781
6CFJ|1|2A|C|1782
6CFJ|1|2A|A|1783
6CFJ|1|2A|A|1784
6CFJ|1|2A|A|1785
6CFJ|1|2A|A|1786
6CFJ|1|2A|A|1787

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 27
50S ribosomal protein L34
Chain 2D
50S ribosomal protein L2
Chain 2W
50S ribosomal protein L22

Coloring options:


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