HL_6CFJ_176

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6CFJ|1|2A|G|2751, 6CFJ|1|2A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFJ_176 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.105

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

6CFJ|1|2A|C|2745
6CFJ|1|2A|U|2746
6CFJ|1|2A|G|2747
6CFJ|1|2A|A|2748
6CFJ|1|2A|A|2749
6CFJ|1|2A|A|2750
6CFJ|1|2A|G|2751
6CFJ|1|2A|C|2752
6CFJ|1|2A|A|2753
6CFJ|1|2A|U|2754
6CFJ|1|2A|C|2755
6CFJ|1|2A|U|2756
6CFJ|1|2A|A|2757
6CFJ|1|2A|A|2758
6CFJ|1|2A|G|2759

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6