3D structure

PDB id
6CFK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CUGAAAGCAUCUAAG
Length
15 nucleotides
Bulged bases
6CFK|1|1A|G|2764, 6CFK|1|1A|C|2768
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6CFK_067 not in the Motif Atlas
Homologous match to HL_7RQB_066
Geometric discrepancy: 0.0297
The information below is about HL_7RQB_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_56677.7
Basepair signature
cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
8

Unit IDs

6CFK|1|1A|C|2758
6CFK|1|1A|U|2759
6CFK|1|1A|G|2760
6CFK|1|1A|A|2761
6CFK|1|1A|A|2762
6CFK|1|1A|A|2763
6CFK|1|1A|G|2764
6CFK|1|1A|C|2765
6CFK|1|1A|A|2766
6CFK|1|1A|U|2767
6CFK|1|1A|C|2768
6CFK|1|1A|U|2769
6CFK|1|1A|A|2770
6CFK|1|1A|A|2771
6CFK|1|1A|G|2772

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 19
50S ribosomal protein L36
Chain 1H
50S ribosomal protein L6
Chain 1N
50S ribosomal protein L13

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3026 s