HL_6CFK_150

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

6CFK|1|2A|A|1780, 6CFK|1|2A|C|1781, 6CFK|1|2A|C|1782, 6CFK|1|2A|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFK_150 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.0518

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6CFK|1|2A|U|1777
6CFK|1|2A|U|1778
6CFK|1|2A|U|1779
6CFK|1|2A|A|1780
6CFK|1|2A|C|1781
6CFK|1|2A|C|1782
6CFK|1|2A|A|1783
6CFK|1|2A|A|1784
6CFK|1|2A|A|1785
6CFK|1|2A|A|1786
6CFK|1|2A|A|1787

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2

Chain 2W

50S ribosomal protein L22