HL_6CFK_210

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGCUUUGCC

Length

9 nucleotides

Bulged bases

6CFK|1|1a|U|202, 6CFK|1|1a|U|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFK_210 not in the Motif Atlas

Geometric match to HL_8C3A_015

Geometric discrepancy: 0.3957

The information below is about HL_8C3A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53971.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6CFK|1|1a|G|199
6CFK|1|1a|G|200
6CFK|1|1a|C|201
6CFK|1|1a|U|202
6CFK|1|1a|U|203
6CFK|1|1a|U|204
6CFK|1|1a|G|216
6CFK|1|1a|C|217
6CFK|1|1a|C|218

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains