HL_6CFK_213

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

G(PSU)AAC(5MU)A(PSU)AA(4OC)

Length

11 nucleotides

Bulged bases

6CFK|1|2A|A|1913

QA status

Modified nucleotides: PSU, 5MU, 4OC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFK_213 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.3957

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

6CFK|1|2A|G|1910
6CFK|1|2A|PSU|1911
6CFK|1|2A|A|1912
6CFK|1|2A|A|1913
6CFK|1|2A|C|1914
6CFK|1|2A|5MU|1915
6CFK|1|2A|A|1916
6CFK|1|2A|PSU|1917
6CFK|1|2A|A|1918
6CFK|1|2A|A|1919
6CFK|1|2A|4OC|1920

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2y

Ribosome-associated inhibitor A