HL_6CFL_065

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6CFL|1|1A|G|2764, 6CFL|1|1A|C|2768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFL_065 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0279

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

6CFL|1|1A|C|2758
6CFL|1|1A|U|2759
6CFL|1|1A|G|2760
6CFL|1|1A|A|2761
6CFL|1|1A|A|2762
6CFL|1|1A|A|2763
6CFL|1|1A|G|2764
6CFL|1|1A|C|2765
6CFL|1|1A|A|2766
6CFL|1|1A|U|2767
6CFL|1|1A|C|2768
6CFL|1|1A|U|2769
6CFL|1|1A|A|2770
6CFL|1|1A|A|2771
6CFL|1|1A|G|2772

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6