HL_6CFL_209

3D structure

PDB id

6CFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with lysyl-CAM and bound to protein Y (YfiA) at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

G(PSU)AAC(5MU)A(PSU)AA(4OC)

Length

11 nucleotides

Bulged bases

6CFL|1|2A|A|1913

QA status

Modified nucleotides: PSU, 5MU, 4OC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CFL_209 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.3673

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

6CFL|1|2A|G|1910
6CFL|1|2A|PSU|1911
6CFL|1|2A|A|1912
6CFL|1|2A|A|1913
6CFL|1|2A|C|1914
6CFL|1|2A|5MU|1915
6CFL|1|2A|A|1916
6CFL|1|2A|PSU|1917
6CFL|1|2A|A|1918
6CFL|1|2A|A|1919
6CFL|1|2A|4OC|1920

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2y

Protein Y