HL_6CK5_004

3D structure

PDB id

6CK5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

PRPP riboswitch from T. mathranii bound to PRPP

Experimental method

X-RAY DIFFRACTION

Resolution

2.49 Å

Loop

Sequence

AUGU

Length

4 nucleotides

Bulged bases

6CK5|1|B|G|31

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CK5_004 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.1947

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6CK5|1|B|A|27
6CK5|1|B|U|28
6CK5|1|B|G|31
6CK5|1|B|U|32

Current chains

Chain B

PRPP riboswitch

Nearby chains

Chain A

Guanidine-I riboswitch