HL_6CZR_120

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

6CZR|1|2A|C|596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CZR_120 not in the Motif Atlas

Geometric match to HL_7RQB_018

Geometric discrepancy: 0.1164

The information below is about HL_7RQB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

6CZR|1|2A|U|588
6CZR|1|2A|A|589
6CZR|1|2A|U|590
6CZR|1|2A|U|591
6CZR|1|2A|G|592
6CZR|1|2A|A|593
6CZR|1|2A|A|594
6CZR|1|2A|G|595
6CZR|1|2A|C|596
6CZR|1|2A|A|597

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2P

50S ribosomal protein L15

Chain 2V

50S ribosomal protein L21