HL_6CZR_169

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6CZR|1|2A|G|2763, 6CZR|1|2A|C|2767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CZR_169 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1476

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

6CZR|1|2A|C|2757
6CZR|1|2A|U|2758
6CZR|1|2A|G|2759
6CZR|1|2A|A|2760
6CZR|1|2A|A|2761
6CZR|1|2A|A|2762
6CZR|1|2A|G|2763
6CZR|1|2A|C|2764
6CZR|1|2A|A|2765
6CZR|1|2A|U|2766
6CZR|1|2A|C|2767
6CZR|1|2A|U|2768
6CZR|1|2A|A|2769
6CZR|1|2A|A|2770
6CZR|1|2A|G|2771

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13