HL_6CZR_195

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

GAA(M2G)(5MC)AACGC

Length

10 nucleotides

Bulged bases

6CZR|1|2a|A|946, 6CZR|1|2a|G|949

QA status

Modified nucleotides: M2G, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6CZR_195 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.2304

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6CZR|1|2a|G|941
6CZR|1|2a|A|942
6CZR|1|2a|A|943
6CZR|1|2a|M2G|944
6CZR|1|2a|5MC|945
6CZR|1|2a|A|946
6CZR|1|2a|A|947
6CZR|1|2a|C|948
6CZR|1|2a|G|949
6CZR|1|2a|C|950

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2i

30S ribosomal protein S9

Chain 2j

30S ribosomal protein S10

Chain 2n

30S ribosomal protein S14 type Z